NSTU Official Website

EXTERNAL PROFILES

Assistant Professor

Dr. Shipan Das Gupta

My research group have extensive research experience in molecular cloning, gene transformation in crop plants, tissue culture, and related molecular biology techniques. Currently, my research group is focused on evaluating the zoonotic risks associated with multidrug-resistant (MDR) pathogenic bacteria transmitted from poultry to humans. To achieve this, we isolate pathogenic bacteria from poultry and characterize their functional properties using a combination of microbiological and molecular biology tools, including whole genome sequencing. In parallel, our group is also working on the development of drought-resistant, high-yielding rice varieties. This work involves both somaclonal variation and advanced genetic engineering approaches, such as the transformation of salt-tolerant genes and functional assessment of their performance.

Biotechnology and Genetic Engineering

BIOGRAPHY

Dr. Shipan Das Gupta was born in Cox’s Bazar and raised in Chittagong, Bangladesh. He completed his Secondary School Certificate (SSC) from Chittagong Collegiate School in 2003 and his Higher Secondary Certificate (HSC) from Government City College in 2005. He went on to pursue a Bachelor’s degree in Genetic Engineering and Biotechnology at the University of Chittagong, graduating in 2011 with the second-highest academic standing in his class. In 2014, Dr. Das Gupta was awarded the prestigious “Scholarship Plus” from the University of Bonn, Germany, to pursue his M.Sc. studies. Upon completion of his Master’s, he was accepted into the international graduate program iGRAD-Plant, a collaborative Ph.D. program jointly offered by Heinrich Heine University Düsseldorf (Germany) and Michigan State University (USA). He successfully completed his Ph.D. in 2018 and continued his postdoctoral research until March 2019. In February 2019, Dr. Das Gupta joined Noakhali Science and Technology University (NSTU) as an Assistant Professor in the Department of Genetic Engineering and Biotechnology, where he continues to serve. During his tenure at NSTU, he has supervised over 12 M.Sc. thesis students and has published more than 16 research articles in Q1 and Q2-ranked international journals. His research group focuses primarily on bioinformatics, microbiology, and molecular biology.

RESEARCH INTERESTS

Molecular Biology Microbiology Bioinformatics

2014 - 2018

Ph.D.

iGRAD-Plant Graduate program

Heinrich Heine University Dusseldorf, Germany

2012 - 2014

M.Sc.

Institute of Cellular and Molecular Biology of Plant

University of Bonn, Germany

2006 - 2011

B.Sc.

Genetic Engineering and Biotechnology

University of Chittagong

Last updated on 2025-10-21 14:07:12

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AWARDS AND ACHIEVEMENTS

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2025

Journal

An Insight into Bacteriocins for Combating Microbial Infections and Ensuring Food Safety

Authors: Mithu Howlader, Shuvo Chandra Das, Shipan Das Gupta, Dhirendra Nath Barman, Mohammed Mafizul Islam, Md. Easin Mia, Md. Salahuddin & Md. Murad Hossain

Journal: International Journal of Peptide Research and Therapeutics, Publisher: Springer , Volume: 31 , Issue: 2 , Page: 31

DOI: 10.1007/s10989-025-10691-5

2025

Journal

Identification of key biomarker genes in liver hepatocellular carcinoma and kidney renal clear cell carcinoma progression: A shared high-throughput screening and molecular docking method with potentials for targeted therapeutic interventions

Authors: Maisha Tasneem, Shipan Das Gupta, Md Jubair Ahmed Jony, Maya Minkara, Rajib Kumar Dey & Jannatul Ferdoush

Journal: Journal of Genetic Engineering and Biotechnology, Publisher: Elsevier , Volume: 23 , Issue: 2 , Page: 100497

DOI: doi.org/10.1016/j.jgeb.2025.100497

2025

Journal

Genetic Insights Into Type 2 Diabetes Mellitus Susceptibility: A Case-Control Study of the ADIPOQ rs1501299 Polymorphism in the Population of Noakhali Region of Bangladesh

Authors: Md Anamul Haque, Md Sad Salabi Sawrav, Shipan Das Gupta, Shuvo Chandra Das, Dhirendra Nath Barman, Mohammed Mafizul Islam & Md Murad Hossain

Journal: Genetics Research, Publisher: Wiley Online Library , Volume: 2025 , Issue: 1 , Page: 8818420

DOI: doi.org/10.1155/genr/8818420

2025

Journal

Designing siRNAs against non-structural genes of all serotypes of Dengue virus using RNAi technology--A computational investigation

Authors: Md. Nur Islam, Israt Jahan Asha, Aninda Kumar Gain, Raihanul Islam, Shipan Das Gupta, Md. Murad Hossain, Shuvo Chandra Das, Mohammed Mafizul Islam & Dhirendra Nath Barman

Journal: Journal of Genetic Engineering and Biotechnology, Publisher: Elsevier , Volume: 23 , Issue: 3 , Page: 100523

DOI: https://doi.org/10.1016/j.jgeb.2025.100523

2025

Journal

Farnesoid X Receptor (FXR) Agonists and Protein Kinase Regulation in NAFLD and NASH: Mechanisms and Therapeutic Potential

Authors: Ayan Saha, Emily Wood, Luna Omeragic, Maya Minkara, Kethain Marma, Shipan Das Gupta and Jannatul Ferdoush

Journal: Kinases and Phosphatases, Publisher: Multidisciplinary Digital Publishing Institute , Volume: 3 , Issue: 3 , Page: 16

DOI: https://doi.org/10.3390/kinasesphosphatases3030016

2025

Journal

Unraveling the structural and functional consequences of non-synonymous single-nucleotide polymorphisms (nsSNPs) in human SOCS2: an in silico approach

Authors: Tanvir Hossain, Md. Nur Islam, Md. Anwar Hossain, Md. Mofizur Rahman, Mohammed Mafizul Islam & Shipan Das Gupta*

Journal: Egyptian Journal of Medical Human Genetics, Publisher: Springer , Volume: 26 , Issue: 1 , Page: 32

DOI: 10.1186/s43042-025-00669-9

2025

Journal

A comprehensive in silico investigation unravels the structural and functional consequences of non-synonymous single-nucleotide polymorphisms in human OXTR gene

Authors: Puja Mazumder, Shuvo Chandra Das, Sobuj Mondol, Ibrahim Khalil Afif, Mithu Howlader, Shipan Das Gupta, Md. Murad Hossain & Md. Mijanur Rahman

Journal: Egyptian Journal of Medical Human Genetics, Publisher: Springer , Volume: 26 , Issue: 1 , Page: 1--23

DOI: 10.1186/s43042-025-00680-0

2024

Journal

Whole genome sequencing of multidrug-resistant Klebsiella pneumoniae from poultry in Noakhali, Bangladesh: Assessing risk of transmission to humans in a pilot study

Authors: Md. Adnan Munim, Afroza Akter Tanni , Md Mobarok Hossain, Kallyan Chakma, Adnan Mannan, S.M. Rafiqul Islam, Jully Gogoi Tiwari & Shipan Das Gupta*

Journal: Comparative immunology, microbiology and infectious diseases, Publisher: Elsevier , Volume: 114 , Page: 102246

DOI: https://doi.org/10.1016/j.cimid.2024.102246

2024

Journal

Multi-drug resistant (MDR) Gram-negative pathogenic bacteria isolated from poultry in the Noakhali region of Bangladesh

Authors: Md. Adnan Munim, Shuvo Chandra Das, Md. Murad Hossain, Ithmam Hami, Mridul Gope Topu & Shipan Das Gupta*

Journal: Plos one, Publisher: Public Library of Science San Francisco, CA USA , Volume: 19 , Issue: 8 , Page: e0292638

DOI: https://doi.org/10.1371/journal.pone.0292638

2024

Journal

In silico Characterization of a Hypothetical Protein (PBJ89160. 1) from Neisseria meningitidis Exhibits a New Insight on Nutritional Virulence and Molecular Docking to Uncover a Therapeutic Target

Authors: Israt Jahan Asha, Shipan Das Gupta, Md. Murad Hossain, Md. Nur Islam, Nurun Nahar Akter, Mohammed Mafizul Islam, Shuvo Chandra Das & Dhirendra Nath Barman

Journal: Evolutionary Bioinformatics, Publisher: SAGE Publications Sage UK: London, England , Volume: 20 , Page: 11769343241298307

DOI: doi/full/10.1177/11769343241298307

2024

Journal

Unveiling key genes in esophageal and lung adenocarcinoma progression: A combined high-throughput analysis and molecular docking approach for targeted therapies

Authors: Monira Binte Momin, Md. Anwar Hossain, Jannatul Ferdoush, Alexander Wayne Garrott, Sumaiya Afroz, Tanjina Rahman & Shipan Das Gupta*

Journal: Human Gene, Publisher: Elsevier , Volume: 42 , Page: 201327

DOI: https://doi.org/10.1016/j.humgen.2024.201327

2024

Journal

A systematic exploration of key candidate genes and pathways in the biogenesis of human gastric cancer: a comprehensive bioinformatics investigation

Authors: Shuhylul Hannan, Ithmam Hami, Rajib Kumar Dey & Shipan Das Gupta*

Journal: Journal of Translational Gastroenterology, Publisher: Xia \& He Publishing Inc. , Volume: 2 , Issue: 1 , Page: 9--20

DOI: 10.14218/JTG.2023.00072

2024

Journal

Association of SLC30A8 rs13266634 gene polymorphism with type 2 diabetes mellitus (T2DM) in a population of Noakhali, Bangladesh: a case--control study

Authors: Farhana Siddiqi Mitu, Md. Murad Hossain, Shuvo Chandra Das, Md. Mafizul Islam, Dhirendra Nath Barman & Shipan Das Gupta*

Journal: Egyptian Journal of Medical Human Genetics, Publisher: Springer , Volume: 25 , Issue: 1 , Page: 22

DOI: 10.1186/s43042-024-00484-8

2024

Journal

In silico analysis of a novel hypothetical protein (YP_498675. 1) from Staphylococcus aureus unravels the protein of tryptophan synthase beta superfamily (Try-synth-beta II)

Authors: Vivian Chakma, Dhirendra Nath Barman, Shuvo Chandra Das, Anwar Hossain, Monira Binte Momin, Maisha Tasneem & Shipan Das Gupta*

Journal: Journal of Genetic Engineering and Biotechnology, Publisher: Elsevier , Volume: 21 , Issue: 1 , Page: 135

DOI: https://doi.org/10.1186/s43141-023-00613-7

2023

Journal

Drought-responsive genes in tomato: meta-analysis of gene expression using machine learning

Authors: Rabiul Haq Chowdhury, Fatiha Sultana Eti, Rayhan Ahmed, Shipan Das Gupta, Pijush Kanti Jhan, Tofazzal Islam, Md. Atiqur Rahman Bhuiyan, Mehede Hassan Rubel & Abul Khayer

Journal: Scientific reports, Publisher: Nature Publishing Group UK London , Volume: 13 , Issue: 1 , Page: 19374

DOI: doi.org/10.1038/s41598-023-45942-2

2023

Journal

Association of CAPN10 gene (rs3842570) polymorphism with the type 2 diabetes mellitus among the population of Noakhali region in Bangladesh: a case-control study

Authors: Munia Sultana, Md Mafizul Islam, Md Murad Hossain, Md Anisur Rahman, Shuvo Chandra Das, Dhirendra Nath Barman, Farhana Siddiqi Mitu, Shipan Das Gupta*

Journal: Genomics \& Informatics, Publisher: N/A , Volume: 21 , Issue: 3 , Page: e33

DOI: doi: 10.5808/gi.23023

2023

Journal

In silico annotation of a hypothetical protein from Listeria monocytogenes EGD-e unfolds a toxin protein of the type II secretion system

Authors: Maisha Tasneem, Shipan Das Gupta, Monira Binte Momin, Kazi Modasser Hossain, Tasnim Binta Osman & Md Fazley Rabbi

Journal: Genomics & Informatics, Publisher: Korea Genome Organization , Volume: 21 , Issue: 1 , Page: e7

DOI: doi: 10.5808/gi.22071

2022

Journal

In-silico analysis unravels the structural and functional consequences of non-synonymous SNPs in the human IL-10 gene

Authors: Shuvo Chandra Das, Md. Anisur Rahman & Shipan Das Gupta*

Journal: Egyptian Journal of Medical Human Genetics, Publisher: Springer , Volume: 23 , Issue: 1 , Page: 10

DOI: 10.1186/s43042-022-00223-x

2021

Journal

An in-silico approach to design potential siRNAs against the ORF57 of Kaposi’s sarcoma-associated herpesvirus

Authors: Anisur Rahman, Shipan Das Gupta, Md Anisur Rahman & Saheda Tamanna

Journal: Genomics & Informatics, Publisher: Korea Genome Organization , Volume: 19 , Issue: 4 , Page: e47

DOI: doi: 10.5808/gi.21057

2021

Journal

Immediate and post-COVID complications of symptomatic and asymptomatic COVID-19 patients in Bangladesh: a cross-sectional retrospective study

Authors: Mohabbat Hossain, Shuvo Chandra Das, Md Thosif Raza, Istiaq Uddin Ahmed, Ishrat Jahan Eva, Tasnimul Karim, Prashanta Chakraborty & Shipan Das Gupta

Journal: Asian Journal of Medical and Biological Research, Publisher: N/A , Volume: 7 , Issue: 2 , Page: 191--201

2019

Journal

The C4Ppc promoters of many C4 grass species share a common regulatory mechanism for gene expression in the mesophyll cell

Authors: Shipan Das Gupta, Myles Levey, Stefanie Schulze, Shanta Karki, Jan Emmerling, Monika Streubel, Udo Gowik, W. Paul Quick, Peter Westhoff

Journal: The Plant Journal, Publisher: Wiley , Volume: 101 , Issue: 1 , Page: 204-216

DOI: doi.org/10.1111/tpj.14532

2019

Journal

Reporter‐based forward genetic screen to identify bundle sheath anatomy mutants in A. thaliana

Authors: Florian Döring, Kumari Billakurthi, Udo Gowik, Stefanie Sultmanis, Roxana Khoshravesh, Shipan Das Gupta, Tammy L. Sage, Peter Westhoff

Journal: The Plant Journal, Publisher: Wiley , Volume: 97 , Issue: 5 , Page: 984-995

DOI: doi.org/10.1111/tpj.14165

2011

Journal

Assessment of antibacterial, thrombolytic and cytotoxic potential of Cassia alata seed oil.

Authors: Adnan Mannan, MJ Kawser, AM Abu Ahmed, Naznin Nahar Islam, SMM Alam, SMM, Md. Asif Emran Khan Emon & Shipan Das Gupta

Journal: Journal of Applied Pharmaceutical Science, Publisher: N/A , Volume: 1 , Issue: 9 , Page: 56-59

DOI: doi/full/10.5555/20123336881

Journal

Computational approach for the prediction of potential MHC binding peptides and epitope mapping in order to develop sero-diagnostic immunogen against potato virus Y

Authors: Alam, Md Jibran and Ashraf, Kutub Uddin Muhammad and Gupta, Shipan Das and Emon, MAK

Journal: International Journal of Computational Bioinformatics and In Silico Modeling, Publisher: N/A , Volume: 2 , Page: 186--198

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Institutional Email: shipan.bge@nstu.edu.bd
Personal Email: shipongeb@gmail.com
Mobile number: 01533746886
Emergency Contact: 01319027205
PABX: N/A
Website: N/A

SOCIAL PROFILES

Department

Biotechnology and Genetic Engineering

Noakhali Science and Technology University